Deep Learning & Computer Vision

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Project Description

Biomedical Image Segmentation with U-Net: Breast Cancer Detection

The project focuses on the application of U-Net, a well-known deep learning architecture, for the segmentation of breast ultrasound images into three categories: normal, benign, and malignant. This segmentation task is crucial in the early detection and diagnosis of breast cancer, potentially improving patient outcomes by allowing for timely intervention.

Data Collection and Preparation

The dataset used in this project is the Breast Ultrasound Dataset, comprising 780 images from 600 female patients, aged between 25 and 75 years. The images were collected in 2018 and are presented in PNG format, with an average resolution of 500×500 pixels. Each image is accompanied by a ground truth mask, which labels the regions of interest as normal, benign, or malignant. These masks are essential for training the segmentation model and evaluating its performance.

  1. Data Exploration: The initial phase involves exploring the dataset to understand its characteristics, such as the distribution of images across different classes and the quality of the ground truth masks. This step helps in identifying any potential issues, such as class imbalance or variations in image quality, that might affect model training.

  2. Data Loading: Efficient data loading mechanisms are implemented to handle the large volume of images and masks, ensuring that the data pipeline can feed batches to the model without bottlenecks.

Exploratory Data Analysis (EDA)

EDA is conducted to gain insights into the dataset’s structure and properties. Key aspects include:

  • Class Distribution: Analysis of the number of images in each class (normal, benign, malignant) to check for any imbalances.
  • Average Mask Visualization: Calculation and visualization of the average mask for each class, providing a visual summary of common features and variations across the dataset.

Data Pre-Processing

Data pre-processing is a critical step in preparing the images and masks for model training. This includes:

  • Normalization: Scaling the pixel values to a consistent range, which is necessary for ensuring that the neural network can learn effectively.
  • Augmentation: Applying various image augmentation techniques (e.g., rotations, flips, zooms) to artificially increase the size of the dataset and introduce variability, helping the model generalize better to unseen data.
  • Resizing: Adjusting the image size to match the input size expected by the U-Net architecture, which may involve cropping or padding.

Model Development

The core of the project is the development of the U-Net model for segmenting breast ultrasound images.

  1. Building U-Net Architecture: The U-Net model is constructed with a contracting path (encoder) and an expanding path (decoder). The encoder captures contextual information, while the decoder reconstructs the image details. Skip connections are used to combine feature maps from corresponding layers in the encoder and decoder, allowing the model to leverage both high-level and low-level features for accurate segmentation.

  2. Training: The model is trained using the prepared dataset, with loss functions and metrics tailored for segmentation tasks, such as Dice coefficient and Intersection over Union (IoU). Training involves iterative optimization to minimize the difference between predicted masks and ground truth masks.

Evaluation

Model evaluation is conducted to assess the segmentation performance. Key metrics include:

  • Dice Coefficient: A measure of overlap between the predicted and ground truth masks.
  • IoU: Another measure of overlap, particularly sensitive to class imbalances.
  • Visual Inspection: Reviewing the predicted masks against ground truth to qualitatively assess model performance.

The evaluation results provide insights into the strengths and limitations of the model, guiding further refinements and potential areas for improvement. This comprehensive approach ensures that the U-Net model is well-suited for the task of breast cancer segmentation, offering a valuable tool for medical professionals in the early detection and treatment of this disease.

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